Serveur d'exploration SRAS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Genomics, the origins of agriculture, and our changing microbe‐scape: Time to revisit some old tales and tell some new ones

Identifieur interne : 001B03 ( Main/Exploration ); précédent : 001B02; suivant : 001B04

Genomics, the origins of agriculture, and our changing microbe‐scape: Time to revisit some old tales and tell some new ones

Auteurs : Kristin N. Harper [États-Unis] ; George J. Armelagos

Source :

RBID : ISTEX:E75E4DA56465559DB8B1CB83224C1E4FFC77CF1A

English descriptors

Abstract

Though agriculture is often viewed as one of humanity's crowning achievements, skeletal evidence indicates that dependence on domesticated plants and animals was accompanied by an increase in infectious disease. Scientists have proposed that many important infections emerged in the period following the advent of agriculture, as a result of newly dense populations and novel proximity to domestic animals that served as reservoirs for novel pathogens. Here, we review genomic evidence regarding pathogen origins, analyzing these data using the epidemiological transition framework. Genetic information has forced us to reconsider how and when many important pathogens emerged; it appears that a number of infections thought to result from contact with domesticated animals arose much earlier than agriculture was adopted. We also consider the broader effect of agriculture upon the microbiome, exploring potential consequences for human health. We end by discussing the changes in the human microbe‐scape we are likely to see in the future. Am J Phys Anthropol 57:135–152, 2013. © 2013 Wiley Periodicals, Inc.

Url:
DOI: 10.1002/ajpa.22396


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI wicri:istexFullTextTei="biblStruct">
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Genomics, the origins of agriculture, and our changing microbe‐scape: Time to revisit some old tales and tell some new ones</title>
<author>
<name sortKey="Harper, Kristin N" sort="Harper, Kristin N" uniqKey="Harper K" first="Kristin N." last="Harper">Kristin N. Harper</name>
</author>
<author>
<name sortKey="Armelagos, George J" sort="Armelagos, George J" uniqKey="Armelagos G" first="George J." last="Armelagos">George J. Armelagos</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:E75E4DA56465559DB8B1CB83224C1E4FFC77CF1A</idno>
<date when="2013" year="2013">2013</date>
<idno type="doi">10.1002/ajpa.22396</idno>
<idno type="url">https://api.istex.fr/ark:/67375/WNG-FMWV7HN5-R/fulltext.pdf</idno>
<idno type="wicri:Area/Istex/Corpus">001713</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">001713</idno>
<idno type="wicri:Area/Istex/Curation">001713</idno>
<idno type="wicri:Area/Istex/Checkpoint">000381</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000381</idno>
<idno type="wicri:doubleKey">0002-9483:2013:Harper K:genomics:the:origins</idno>
<idno type="wicri:Area/Main/Merge">001B13</idno>
<idno type="wicri:Area/Main/Curation">001B03</idno>
<idno type="wicri:Area/Main/Exploration">001B03</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title level="a" type="main">Genomics, the origins of agriculture, and our changing microbe‐scape: Time to revisit some old tales and tell some new ones</title>
<author>
<name sortKey="Harper, Kristin N" sort="Harper, Kristin N" uniqKey="Harper K" first="Kristin N." last="Harper">Kristin N. Harper</name>
<affiliation wicri:level="2">
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">État de New York</region>
</placeName>
<wicri:cityArea>Department of Environmental Health Sciences, Columbia University, NY, 10032</wicri:cityArea>
</affiliation>
<affiliation></affiliation>
</author>
<author>
<name sortKey="Armelagos, George J" sort="Armelagos, George J" uniqKey="Armelagos G" first="George J." last="Armelagos">George J. Armelagos</name>
<affiliation>
<wicri:noCountry code="subField">Atlanta</wicri:noCountry>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series>
<title level="j" type="main">American Journal of Physical Anthropology</title>
<title level="j" type="alt">AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY</title>
<idno type="ISSN">0002-9483</idno>
<idno type="eISSN">1096-8644</idno>
<imprint>
<biblScope unit="vol">152</biblScope>
<biblScope unit="issue">S57</biblScope>
<biblScope unit="page" from="135">135</biblScope>
<biblScope unit="page" to="152">152</biblScope>
<biblScope unit="page-count">18</biblScope>
<date type="published" when="2013-12">2013-12</date>
</imprint>
<idno type="ISSN">0002-9483</idno>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt>
<idno type="ISSN">0002-9483</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="Teeft" xml:lang="en">
<term>Acad</term>
<term>Academic press</term>
<term>African apes</term>
<term>Agriculture</term>
<term>Allergic disease</term>
<term>Allergy</term>
<term>American journal</term>
<term>American library</term>
<term>Ancient origin</term>
<term>Anthropol</term>
<term>Antibiotic</term>
<term>Arch intern</term>
<term>Armelagos</term>
<term>Autoimmune disorders</term>
<term>Bacterium</term>
<term>Bacteroides</term>
<term>Batwa pygmies</term>
<term>Better understanding</term>
<term>Biol</term>
<term>Black death</term>
<term>Blaser</term>
<term>Body lice</term>
<term>Bordetella pertussis</term>
<term>Borrelia burgdorferi</term>
<term>Bowel disease</term>
<term>Cambridge university press</term>
<term>Cervical cancer</term>
<term>Chimpanzee</term>
<term>Clin</term>
<term>Columbia university</term>
<term>Democratic republic</term>
<term>Direct effects</term>
<term>Diverged</term>
<term>Domestic animals</term>
<term>Domesticated</term>
<term>Domesticated animals</term>
<term>Drugresistant tuberculosis</term>
<term>Early divergence</term>
<term>East africa</term>
<term>Environmental health sciences</term>
<term>Epidemiological</term>
<term>Epidemiological transition</term>
<term>Epidemiological transitions</term>
<term>Esophageal cancer</term>
<term>Evol</term>
<term>Evolutionary history</term>
<term>Falciparum</term>
<term>Falciparum strains</term>
<term>Gastric cancer</term>
<term>Gastroenterol</term>
<term>Genet</term>
<term>Genetic</term>
<term>Genetic analysis</term>
<term>Genetic data</term>
<term>Genetic evidence</term>
<term>Genetic studies</term>
<term>Genome</term>
<term>Genomic</term>
<term>Genomic data</term>
<term>Genomic evidence</term>
<term>Genomics</term>
<term>Gorilla</term>
<term>Head lice</term>
<term>Health interventions</term>
<term>Heirloom</term>
<term>Heirloom pathogen</term>
<term>Helicobacter</term>
<term>Helicobacter pylori</term>
<term>Helicobacter pylori infection</term>
<term>Host switches</term>
<term>Human body</term>
<term>Human health</term>
<term>Human history</term>
<term>Human infections</term>
<term>Human microbes</term>
<term>Human microbiome</term>
<term>Human microbiome project</term>
<term>Human microbiota</term>
<term>Human migrations</term>
<term>Human pathogens</term>
<term>Human population</term>
<term>Human race</term>
<term>Human species</term>
<term>Human tapeworms</term>
<term>Humans</term>
<term>Humanus</term>
<term>Hygiene hypothesis</term>
<term>Important implications</term>
<term>Important source</term>
<term>Independent lines</term>
<term>Indirect effects</term>
<term>Infection</term>
<term>Infectious disease</term>
<term>Infectious diseases</term>
<term>Infects humans</term>
<term>Intensive care units</term>
<term>Last century</term>
<term>Lineage</term>
<term>Livingstone</term>
<term>Louse</term>
<term>Lower levels</term>
<term>Malaria</term>
<term>Malarial resistance</term>
<term>Malignant malaria</term>
<term>Many infections</term>
<term>Many pathogens</term>
<term>Many researchers</term>
<term>Measles virus</term>
<term>Microbe</term>
<term>Microbial</term>
<term>Microbiol</term>
<term>Microbiome</term>
<term>Microbiome diversity</term>
<term>Microbiomes</term>
<term>Microbiota</term>
<term>Modern humans</term>
<term>Modern life</term>
<term>Modern samples</term>
<term>Modern times</term>
<term>Molecular clock</term>
<term>More samples</term>
<term>Mtbc</term>
<term>Mtbc lineages</term>
<term>Mycobacterium</term>
<term>Mycobacterium bovis</term>
<term>Mycobacterium tuberculosis</term>
<term>Natl</term>
<term>Natural history</term>
<term>Natural host</term>
<term>Neolithic</term>
<term>Online issue</term>
<term>Origin stories</term>
<term>Osteological paradox</term>
<term>Other pathogens</term>
<term>Pallidum</term>
<term>Pandemic spread</term>
<term>Parasite</term>
<term>Pathogen</term>
<term>Pathogen discovery</term>
<term>Pediculus humanus</term>
<term>Phil trans</term>
<term>Phylogenetic</term>
<term>Phylogenetic diversity</term>
<term>Phylogenetic evidence</term>
<term>Phylogenetic studies</term>
<term>Phylogenetic study</term>
<term>Phys anthropol</term>
<term>Physical anthropologists</term>
<term>Physical anthropology</term>
<term>Plasmodium</term>
<term>Plasmodium falciparum</term>
<term>Plo</term>
<term>Plos neglect</term>
<term>Poor preservation</term>
<term>Population size</term>
<term>Predating agriculture</term>
<term>Proc</term>
<term>Proc natl acad</term>
<term>Public health image library</term>
<term>Pylori infection</term>
<term>Pylorus</term>
<term>Researcher</term>
<term>Rinderpest virus</term>
<term>Rook</term>
<term>Rural malawi</term>
<term>Saliva microbiome</term>
<term>Second genome</term>
<term>Sequence analysis</term>
<term>Sequence data</term>
<term>Sickle cell trait</term>
<term>Skeletal evidence</term>
<term>Skeletal lesions</term>
<term>Skeletal samples</term>
<term>Skin microbiome</term>
<term>Southern cameroon</term>
<term>Staphylococcus aureus</term>
<term>Substitution rates</term>
<term>Swidden agriculture</term>
<term>Syphilis</term>
<term>Systematic review</term>
<term>Taenia</term>
<term>Taenia saginata</term>
<term>Taenia solium</term>
<term>Tapeworm</term>
<term>Telltale marks</term>
<term>Time period</term>
<term>Toxoplasma gondii</term>
<term>Transmission mode</term>
<term>Treponema pallidum infection</term>
<term>Treponemal</term>
<term>Treponemal disease</term>
<term>Trichinella spiralis</term>
<term>Tuberculosis</term>
<term>University press</term>
<term>Virol</term>
<term>Wang</term>
<term>West africa</term>
<term>Western diet</term>
<term>Whooping cough</term>
<term>Wiley periodicals</term>
<term>Worst mistake</term>
<term>Yaws</term>
<term>Yersinia pestis</term>
<term>Zoonotic pathogen</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract">Though agriculture is often viewed as one of humanity's crowning achievements, skeletal evidence indicates that dependence on domesticated plants and animals was accompanied by an increase in infectious disease. Scientists have proposed that many important infections emerged in the period following the advent of agriculture, as a result of newly dense populations and novel proximity to domestic animals that served as reservoirs for novel pathogens. Here, we review genomic evidence regarding pathogen origins, analyzing these data using the epidemiological transition framework. Genetic information has forced us to reconsider how and when many important pathogens emerged; it appears that a number of infections thought to result from contact with domesticated animals arose much earlier than agriculture was adopted. We also consider the broader effect of agriculture upon the microbiome, exploring potential consequences for human health. We end by discussing the changes in the human microbe‐scape we are likely to see in the future. Am J Phys Anthropol 57:135–152, 2013. © 2013 Wiley Periodicals, Inc.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
<region>
<li>État de New York</li>
</region>
</list>
<tree>
<noCountry>
<name sortKey="Armelagos, George J" sort="Armelagos, George J" uniqKey="Armelagos G" first="George J." last="Armelagos">George J. Armelagos</name>
</noCountry>
<country name="États-Unis">
<region name="État de New York">
<name sortKey="Harper, Kristin N" sort="Harper, Kristin N" uniqKey="Harper K" first="Kristin N." last="Harper">Kristin N. Harper</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001B03 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001B03 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     ISTEX:E75E4DA56465559DB8B1CB83224C1E4FFC77CF1A
   |texte=   Genomics, the origins of agriculture, and our changing microbe‐scape: Time to revisit some old tales and tell some new ones
}}

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021